J Craig Venter Institute

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Founded in 1992, J. Craig Venter Institute is a not-for-profit research institute whose primary research interests are in structural, functional and comparative analysis of genomes and gene products from a wide variety of organisms

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J Craig Venter Institute's Articles

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Transcriptomics of type 2 diabetic and healthy human neutrophils

Authors: Sarah E. Kleinstein, Jamison McCorrison, Alaa Ahmed, Hatice Hasturk, Thomas E. Van Dyke and Marcelo Freire

Citation: BMC Immunology 2021 22:37

Content type: Research article

Published on: 16 June 2021
Molecular epidemiology of Staphylococcus aureus in African children from rural and urban communities with atopic dermatitis

Authors: Gillian O. N. Ndhlovu, Regina E. Abotsi, Adebayo O. Shittu, Shima M. Abdulgader, Dorota Jamrozy, Christopher L. Dupont, Avumile Mankahla, Mark P. Nicol, Carol Hlela, Michael E. Levin, Nonhlanhla Lunjani and Felix S. Dube

Citation: BMC Infectious Diseases 2021 21:348

Content type: Research article

Published on: 13 April 2021
Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok, Thailand from 2015 to 2017

Authors: Adhiratha Boonyasiri, Elita Jauneikaite, Lauren M. Brinkac, Chris Greco, Kanokorn Lerdlamyong, Teerawit Tangkoskul, Kevin Nguyen, Visanu Thamlikitkul and Derrick E. Fouts

Citation: BMC Infectious Diseases 2021 21:142

Content type: Research article

Published on: 4 February 2021
Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation

Authors: Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa Hailemariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yanbao Yu, Gobena Ameni and Rembert Pieper

Citation: Proteome Science 2020 18:10

Content type: Research

Published on: 31 October 2020
Molecular epidemiology of clinical Mycobacterium tuberculosis complex isolates in South Omo, Southern Ethiopia

Authors: Biniam Wondale, Kwon Keehwan, Girmay Medhin, Takele Teklu, Temesgen Mohammed, Samuel Tolosa, Aboma Zewude, Friehiwot Amsalu, Rembert Pieper and Gobena Ameni

Citation: BMC Infectious Diseases 2020 20:750

Content type: Research article

Published on: 13 October 2020
Gapless assembly of maize chromosomes using long-read technologies

Authors: Jianing Liu, Arun S. Seetharam, Kapeel Chougule, Shujun Ou, Kyle W. Swentowsky, Jonathan I. Gent, Victor Llaca, Margaret R. Woodhouse, Nancy Manchanda, Gernot G. Presting, David A. Kudrna, Magdy Alabady, Candice N. Hirsch, Kevin A. Fengler, Doreen Ware, Todd P. Michael…

Citation: Genome Biology 2020 21:121

Content type: Short Report

Published on: 20 May 2020
The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

Authors: Camilla Urbaniak, Hernan Lorenzi, James Thissen, Crystal Jaing, Brian Crucian, Clarence Sams, Duane Pierson, Kasthuri Venkateswaran and Satish Mehta

Citation: Microbiome 2020 8:56

Content type: Research

Published on: 20 April 2020
An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

Authors: Ilan Shomorony, Elizabeth T. Cirulli, Lei Huang, Lori A. Napier, Robyn R. Heister, Michael Hicks, Isaac V. Cohen, Hung-Chun Yu, Christine Leon Swisher, Natalie M. Schenker-Ahmed, Weizhong Li, Karen E. Nelson, Pamila Brar, Andrew M. Kahn, Timothy D. Spector, C. Thomas Caskey…

Citation: Genome Medicine 2020 12:7

Content type: Research

Published on: 10 January 2020
Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure

Authors: Yun Zhang, Gautam Bandyopadhyay, David J. Topham, Ann R. Falsey and Xing Qiu

Citation: BMC Bioinformatics 2019 20:185

Content type: Methodology article

Published on: 15 April 2019
OMeta: an ontology-based, data-driven metadata tracking system

Authors: Indresh Singh, Mehmet Kuscuoglu, Derek M. Harkins, Granger Sutton, Derrick E. Fouts and Karen E. Nelson

Citation: BMC Bioinformatics 2019 20:8

Content type: Software

Published on: 7 January 2019
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers’ diarrhea

Authors: Qiyun Zhu, Christopher L. Dupont, Marcus B. Jones, Kevin M. Pham, Zhi-Dong Jiang, Herbert L. DuPont and Sarah K. Highlander

Citation: Microbiome 2018 6:201

Content type: Research

Published on: 8 November 2018
Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas

Authors: Alexandra R. Buckley, Trey Ideker, Hannah Carter, Olivier Harismendy and Nicholas J. Schork

Citation: Genome Medicine 2018 10:69

Content type: Research

Published on: 14 September 2018
PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

Authors: Thomas H. Clarke, Lauren M. Brinkac, Jason M. Inman, Granger Sutton and Derrick E. Fouts

Citation: BMC Bioinformatics 2018 19:246

Content type: Software

Published on: 27 June 2018
DNA assembly with error correction on a droplet digital microfluidics platform

Authors: Yuliya Khilko, Philip D. Weyman, John I. Glass, Mark D. Adams, Melanie A. McNeil and Peter B. Griffin

Citation: BMC Biotechnology 2018 18:37

Content type: Methodology article

Published on: 1 June 2018
Two inhibitors of yeast plasma membrane ATPase 1 (ScPma1p): toward the development of novel antifungal therapies

Authors: Sabine Ottilie, Gregory M. Goldgof, Andrea L. Cheung, Jennifer L. Walker, Edgar Vigil, Kenneth E. Allen, Yevgeniya Antonova-Koch, Carolyn W. Slayman, Yo Suzuki and Jacob D. Durrant

Citation: Journal of Cheminformatics 2018 10:6

Content type: Research article

Published on: 20 February 2018
Latent tuberculosis infection and associated risk indicators in pastoral communities in southern Ethiopia: a community based cross-sectional study

Authors: Takele Teklu, Mengistu Legesse, Girmay Medhin, Aboma Zewude, Mahlet Chanyalew, Martha Zewdie, Biniam Wondale, Milkessa Haile-Mariam, Rembert Pieper and Gobena Ameni

Citation: BMC Public Health 2018 18:266

Content type: Research article

Published on: 17 February 2018
Cell type discovery and representation in the era of high-content single cell phenotyping

Authors: Trygve Bakken, Lindsay Cowell, Brian D. Aevermann, Mark Novotny, Rebecca Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein and Richard H. Scheuermann

Citation: BMC Bioinformatics 2017 18(Suppl 17):559

Content type: Research

Published on: 21 December 2017

This article is part of a Supplement: Volume 18 Supplement 17
VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

Authors: Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy L. Monson, William H. Rounds, Florian Rubelt, Walter Scarborough, Richard H. Scheuermann and Lindsay G. Cowell

Citation: BMC Bioinformatics 2017 18:448

Content type: Software

Published on: 11 October 2017
Nontuberculosis mycobacteria are the major causes of tuberculosis like lesions in cattle slaughtered at Bahir Dar Abattoir, northwestern Ethiopia

Authors: Anwar Nuru, Aboma Zewude, Temesgen Mohammed, Biniam Wondale, Laikemariam Teshome, Muluwork Getahun, Gezahegne Mamo, Girmay Medhin, Rembert Pieper and Gobena Ameni

Citation: BMC Veterinary Research 2017 13:237

Content type: Research article

Published on: 15 August 2017
Erratum to: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species

Authors: S. L. Pearce, D. F. Clarke, P. D. East, S. Elfekih, K. H. J. Gordon, L. S. Jermiin, A. McGaughran, J. G. Oakeshott, A. Papanicolaou, O. P. Perera, R. V. Rane, S. Richards, W. T. Tay, T. K. Walsh, A. Anderson, C. J. Anderson…

Citation: BMC Biology 2017 15:69

Content type: Erratum

Published on: 15 August 2017

The original article was published in BMC Biology 2017 15:63

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J Craig Venter Institute

J Craig Venter Institute's Articles

Transcriptomics of type 2 diabetic and healthy human neutrophils

Molecular epidemiology of Staphylococcus aureus in African children from rural and urban communities with atopic dermatitis

Genomic and clinical characterisation of multidrug-resistant carbapenemase-producing ST231 and ST16 Klebsiella pneumoniae isolates colonising patients at Siriraj hospital, Bangkok, Thailand from 2015 to 2017

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation

Molecular epidemiology of clinical Mycobacterium tuberculosis complex isolates in South Omo, Southern Ethiopia

Gapless assembly of maize chromosomes using long-read technologies

The influence of spaceflight on the astronaut salivary microbiome and the search for a microbiome biomarker for viral reactivation

An unsupervised learning approach to identify novel signatures of health and disease from multimodal data

Highly efficient hypothesis testing methods for regression-type tests with correlated observations and heterogeneous variance structure

OMeta: an ontology-based, data-driven metadata tracking system

Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers’ diarrhea

Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes

DNA assembly with error correction on a droplet digital microfluidics platform

Two inhibitors of yeast plasma membrane ATPase 1 (ScPma1p): toward the development of novel antifungal therapies

Latent tuberculosis infection and associated risk indicators in pastoral communities in southern Ethiopia: a community based cross-sectional study

Cell type discovery and representation in the era of high-content single cell phenotyping

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data

Nontuberculosis mycobacteria are the major causes of tuberculosis like lesions in cattle slaughtered at Bahir Dar Abattoir, northwestern Ethiopia

Erratum to: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species