J Craig Venter Institute

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Founded in 1992, J. Craig Venter Institute is a not-for-profit research institute whose primary research interests are in structural, functional and comparative analysis of genomes and gene products from a wide variety of organisms

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J Craig Venter Institute's Articles

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Page 7 of 10

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

Authors: Srilatha Kuntumalla, John C Braisted, Shih-Ting Huang, Prashanth P Parmar, David J Clark, Hamid Alami, Quanshun Zhang, Arthur Donohue-Rolfe, Saul Tzipori, Robert D Fleischmann, Scott N Peterson and Rembert Pieper

Citation: Proteome Science 2009 7:22

Content type: Research

Published on: 29 June 2009
Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

Authors: Ben-Wen Li, Amy C Rush, Makedonka Mitreva, Yong Yin, David Spiro, Elodie Ghedin and Gary J Weil

Citation: BMC Genomics 2009 10:267

Content type: Research article

Published on: 15 June 2009
Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes

Authors: Rembert Pieper, Shih-Ting Huang, David J Clark, Jeffrey M Robinson, Hamid Alami, Prashanth P Parmar, Moo-Jin Suh, Srilatha Kuntumalla, Christine L Bunai, Robert D Perry, Robert D Fleischmann and Scott N Peterson

Citation: Proteome Science 2009 7:5

Content type: Research

Published on: 19 February 2009
Comparative genomics of mutualistic viruses of Glyptapantelesparasitic wasps

Authors: Christopher A Desjardins, Dawn E Gundersen-Rindal, Jessica B Hostetler, Luke J Tallon, Douglas W Fadrosh, Roger W Fuester, Monica J Pedroni, Brian J Haas, Michael C Schatz, Kristine M Jones, Jonathan Crabtree, Heather Forberger and Vishvanath Nene

Citation: Genome Biology 2008 9:R183

Content type: Research

Published on: 30 December 2008
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

Authors: Jorge Valdés, Inti Pedroso, Raquel Quatrini, Robert J Dodson, Herve Tettelin, Robert Blake II, Jonathan A Eisen and David S Holmes

Citation: BMC Genomics 2008 9:597

Content type: Research article

Published on: 11 December 2008
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

Authors: Hernan Lorenzi, Mathangi Thiagarajan, Brian Haas, Jennifer Wortman, Neil Hall and Elisabet Caler

Citation: BMC Genomics 2008 9:595

Content type: Research article

Published on: 10 December 2008
The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

Authors: John C Braisted, Srilatha Kuntumalla, Christine Vogel, Edward M Marcotte, Alan R Rodrigues, Rong Wang, Shih-Ting Huang, Erik S Ferlanti, Alexander I Saeed, Robert D Fleischmann, Scott N Peterson and Rembert Pieper

Citation: BMC Bioinformatics 2008 9:529

Content type: Software

Published on: 9 December 2008
Genomic islands from five strains of Burkholderia pseudomallei

Authors: Apichai Tuanyok, Benjamin R Leadem, Raymond K Auerbach, Stephen M Beckstrom-Sternberg, James S Beckstrom-Sternberg, Mark Mayo, Vanaporn Wuthiekanun, Thomas S Brettin, William C Nierman, Sharon J Peacock, Bart J Currie, David M Wagner and Paul Keim

Citation: BMC Genomics 2008 9:566

Content type: Research article

Published on: 27 November 2008
Erratum to: Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A

Authors: Steven L Salzberg, Daniel D Sommer, Michael C Schatz, Adam M Phillippy, Pablo D Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur L Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna…

Citation: BMC Genomics 2008 9:534

Content type: Erratum

Published on: 11 November 2008

The original article was published in BMC Genomics 2008 9:204
Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition

Authors: Wei Zhu, Shu Ouyang, Marina Iovene, Kimberly O'Brien, Hue Vuong, Jiming Jiang and C Robin Buell

Citation: BMC Genomics 2008 9:286

Content type: Research article

Published on: 13 June 2008
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

Authors: Alexis Dufresne, Martin Ostrowski, David J Scanlan, Laurence Garczarek, Sophie Mazard, Brian P Palenik, Ian T Paulsen, Nicole Tandeau de Marsac, Patrick Wincker, Carole Dossat, Steve Ferriera, Justin Johnson, Anton F Post, Wolfgang R Hess and Frédéric Partensky

Citation: Genome Biology 2008 9:R90

Content type: Research

Published on: 28 May 2008
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A

Authors: Steven L Salzberg, Daniel D Sommer, Michael C Schatz, Adam M Phillippy, Pablo D Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur L Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna…

Citation: BMC Genomics 2008 9:204

Content type: Research article

Published on: 1 May 2008
Burkholderia pseudomallei genome plasticity associated with genomic island variation

Authors: Sarinna Tumapa, Matthew TG Holden, Mongkol Vesaratchavest, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Wirongrong Chierakul, Edward J Feil, Bart J Currie, Nicholas PJ Day, William C Nierman and Sharon J Peacock

Citation: BMC Genomics 2008 9:190

Content type: Research article

Published on: 25 April 2008
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Authors: Shibu Yooseph, Weizhong Li and Granger Sutton

Citation: BMC Bioinformatics 2008 9:182

Content type: Methodology article

Published on: 10 April 2008
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages

Authors: MA Rouf Mian, Yan Zhang, Zeng-Yu Wang, Ji-Yi Zhang, Xiaofei Cheng, Lei Chen, Konstantin Chekhovskiy, Xinbin Dai, Chunhong Mao, Foo Cheung, Xuechun Zhao, Ji He, Angela D Scott, Christopher D Town and Gregory D May

Citation: BMC Plant Biology 2008 8:27

Content type: Research article

Published on: 4 March 2008
Orphan SelD proteins and selenium-dependent molybdenum hydroxylases

Authors: Daniel H Haft and William T Self

Citation: Biology Direct 2008 3:4

Content type: Discovery notes

Published on: 20 February 2008
Viral genome sequencing by random priming methods

Authors: Appolinaire Djikeng, Rebecca Halpin, Ryan Kuzmickas, Jay DePasse, Jeremy Feldblyum, Naomi Sengamalay, Claudio Afonso, Xinsheng Zhang, Norman G Anderson, Elodie Ghedin and David J Spiro

Citation: BMC Genomics 2008 9:5

Content type: Methodology article

Published on: 7 January 2008
EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome

Authors: Françoise Thibaud-Nissen, Matthew Campbell, John P Hamilton, Wei Zhu and C Robin Buell

Citation: BMC Genomics 2007 8:388

Content type: Software

Published on: 25 October 2007
Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes

Authors: Nicola J Patron, Ross F Waller, Anton J Cozijnsen, David C Straney, Donald M Gardiner, William C Nierman and Barbara J Howlett

Citation: BMC Evolutionary Biology 2007 7:174

Content type: Research article

Published on: 26 September 2007
Using comparative genomics to reorder the human genome sequence into a virtual sheep genome

Authors: Brian P Dalrymple, Ewen F Kirkness, Mikhail Nefedov, Sean McWilliam, Abhirami Ratnakumar, Wes Barris, Shaying Zhao, Jyoti Shetty, Jillian F Maddox, Margaret O'Grady, Frank Nicholas, Allan M Crawford, Tim Smith, Pieter J de Jong, John McEwan, V Hutton Oddy…

Citation: Genome Biology 2007 8:R152

Content type: Research

Published on: 30 July 2007

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J Craig Venter Institute

J Craig Venter Institute's Articles

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome

Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes

Comparative genomics of mutualistic viruses of Glyptapantelesparasitic wasps

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

Genomic islands from five strains of Burkholderia pseudomallei

Erratum to: Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A

Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99^A

Burkholderia pseudomallei genome plasticity associated with genomic island variation

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages

Orphan SelD proteins and selenium-dependent molybdenum hydroxylases

Viral genome sequencing by random priming methods

EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome

Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome