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ETH Zurich's Articles

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Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

Authors: Heidi Kaech, Alice B. Dennis and Christoph Vorburger

Citation: BMC Genomics 2021 22:449

Content type: Research

Published on: 16 June 2021
The Bourque distances for mutation trees of cancers

Authors: Katharina Jahn, Niko Beerenwinkel and Louxin Zhang

Citation: Algorithms for Molecular Biology 2021 16:9

Content type: Research

Published on: 10 June 2021
A ribonucleoprotein transfection strategy for CRISPR/Cas9‐mediated gene editing and single cell cloning in rainbow trout cells

Authors: Marina Zoppo, Nicole Okoniewski, Stanislav Pantelyushin, Johannes vom Berg and Kristin Schirmer

Citation: Cell & Bioscience 2021 11:103

Content type: Methodology

Published on: 3 June 2021
Boundaries potentiate polycomb response element-mediated silencing

Authors: Maksim Erokhin, Fedor Gorbenko, Dmitry Lomaev, Marina Yu Mazina, Anna Mikhailova, Azat K. Garaev, Aleksander Parshikov, Nadezhda E. Vorobyeva, Pavel Georgiev, Paul Schedl and Darya Chetverina

Citation: BMC Biology 2021 19:113

Content type: Research article

Published on: 2 June 2021
Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

Authors: Thomas Oberhänsli, Anna Dalbosco, Virginie Leschenne, Anne Bohr, Sascha Buchleither, Lucius Tamm, Lukas Wille, Srđan G. Aćimović, Fatemeh Khodadadi, Young-Hyun Ryu, Bruno Studer, Hans-Jakob Schärer and Andrea Patocchi

Citation: CABI Agriculture and Bioscience 2021 2:21

Content type: Research

Published on: 29 May 2021
Feasibility of a blended therapy approach in the treatment of patients with inflammatory myopathies

Authors: Pierrette Baschung Pfister, Ruud H. Knols, Rob A. de Bie and Eling D. de Bruin

Citation: Archives of Physiotherapy 2021 11:14

Content type: Research article

Published on: 27 May 2021
Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

Authors: Audald Lloret-Villas, Meenu Bhati, Naveen Kumar Kadri, Ruedi Fries and Hubert Pausch

Citation: BMC Genomics 2021 22:363

Content type: Research article

Published on: 19 May 2021
Technical assessment of the NDI Polaris Vega optical tracking system

Authors: Giovanni Fattori, Antony John Lomax, Damien Charles Weber and Sairos Safai

Citation: Radiation Oncology 2021 16:87

Content type: Short report

Published on: 12 May 2021
Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field

Authors: Selma Cadot, Hang Guan, Moritz Bigalke, Jean-Claude Walser, Georg Jander, Matthias Erb, Marcel G. A. van der Heijden and Klaus Schlaeppi

Citation: Microbiome 2021 9:103

Content type: Research

Published on: 7 May 2021
Ethics review of big data research: What should stay and what should be reformed?

Authors: Agata Ferretti, Marcello Ienca, Mark Sheehan, Alessandro Blasimme, Edward S. Dove, Bobbie Farsides, Phoebe Friesen, Jeff Kahn, Walter Karlen, Peter Kleist, S. Matthew Liao, Camille Nebeker, Gabrielle Samuel, Mahsa Shabani, Minerva Rivas Velarde and Effy Vayena

Citation: BMC Medical Ethics 2021 22:51

Content type: Debate

Published on: 30 April 2021
Correlative light and electron microscopy suggests that mutant huntingtin dysregulates the endolysosomal pathway in presymptomatic Huntington’s disease

Authors: Ya Zhou, Thomas R. Peskett, Christian Landles, John B. Warner, Kirupa Sathasivam, Edward J. Smith, Shu Chen, Ronald Wetzel, Hilal A. Lashuel, Gillian P. Bates and Helen R. Saibil

Citation: Acta Neuropathologica Communications 2021 9:70

Content type: Research

Published on: 14 April 2021
Streamlining differential exon and 3′ UTR usage with diffUTR

Authors: Stefan Gerber, Gerhard Schratt and Pierre-Luc Germain

Citation: BMC Bioinformatics 2021 22:189

Content type: Methodology article

Published on: 13 April 2021
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox

Authors: Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork, Shinichi Sunagawa and Georg Zeller

Citation: Genome Biology 2021 22:93

Content type: Software

Published on: 30 March 2021
Wood product carbon substitution benefits: a critical review of assumptions

Authors: Christina Howard, Caren C. Dymond, Verena C. Griess, Darius Tolkien-Spurr and G. Cornelis van Kooten

Citation: Carbon Balance and Management 2021 16:9

Content type: Review

Published on: 30 March 2021
High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains

Authors: Mirjam Zünd, Hans-Joachim Ruscheweyh, Christopher M. Field, Natalie Meyer, Miguelangel Cuenca, Daniel Hoces, Wolf-Dietrich Hardt and Shinichi Sunagawa

Citation: Microbiome 2021 9:77

Content type: Research

Published on: 29 March 2021
Creatine homeostasis and protein energy wasting in hemodialysis patients

Authors: Adrian Post, Joëlle C. Schutten, Daan Kremer, Yvonne van der Veen, Dion Groothof, Camilo G. Sotomayor, Christa A. Koops, Pim de Blaauw, Ido P. Kema, Ralf Westerhuis, Theo Wallimann, M. Rebecca Heiner-Fokkema, Stephan J. L. Bakker and Casper F. M. Franssen

Citation: Journal of Translational Medicine 2021 19:115

Content type: Research

Published on: 20 March 2021
R.ROSETTA: an interpretable machine learning framework

Authors: Mateusz Garbulowski, Klev Diamanti, Karolina Smolińska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk and Jan Komorowski

Citation: BMC Bioinformatics 2021 22:110

Content type: Software

Published on: 6 March 2021
DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks

Authors: Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker and Rudiyanto Gunawan

Citation: BMC Bioinformatics 2021 22:108

Content type: Methodology article

Published on: 4 March 2021
PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants

Authors: Sebastian M. Siegner, Mehmet E. Karasu, Markus S. Schröder, Zacharias Kontarakis and Jacob E. Corn

Citation: BMC Bioinformatics 2021 22:101

Content type: Software

Published on: 2 March 2021
Transcriptome dynamics in early in vivo developing and in vitro produced porcine embryos

Authors: Vera A. van der Weijden, Meret Schmidhauser, Mayuko Kurome, Johannes Knubben, Veronika L. Flöter, Eckhard Wolf and Susanne E. Ulbrich

Citation: BMC Genomics 2021 22:139

Content type: Research article

Published on: 27 February 2021

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ETH Zurich

ETH Zurich's Articles

Triple RNA-Seq characterizes aphid gene expression in response to infection with unequally virulent strains of the endosymbiont Hamiltonella defensa

The Bourque distances for mutation trees of cancers

A ribonucleoprotein transfection strategy for CRISPR/Cas9‐mediated gene editing and single cell cloning in rainbow trout cells

Boundaries potentiate polycomb response element-mediated silencing

Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates

Feasibility of a blended therapy approach in the treatment of patients with inflammatory myopathies

Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

Technical assessment of the NDI Polaris Vega optical tracking system

Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field

Ethics review of big data research: What should stay and what should be reformed?

Correlative light and electron microscopy suggests that mutant huntingtin dysregulates the endolysosomal pathway in presymptomatic Huntington’s disease

Streamlining differential exon and 3′ UTR usage with diffUTR

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox

Wood product carbon substitution benefits: a critical review of assumptions

High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains

Creatine homeostasis and protein energy wasting in hemodialysis patients

R.ROSETTA: an interpretable machine learning framework

DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks

PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants

Transcriptome dynamics in early in vivo developing and in vitro produced porcine embryos