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ETH Zurich's Articles

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The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

Authors: Sandra N Loevenich, Erich Brunner, Nichole L King, Eric W Deutsch, Stephen E Stein, Ruedi Aebersold and Ernst Hafen

Citation: BMC Bioinformatics 2009 10:59

Content type: Database

Published on: 11 February 2009
Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae

Authors: Tobias S Christensen, Ana Paula Oliveira and Jens Nielsen

Citation: BMC Systems Biology 2009 3:7

Content type: Research article

Published on: 14 January 2009
The constancy of gene conservation across divergent bacterial orders

Authors: Olin K Silander and Martin Ackermann

Citation: BMC Research Notes 2009 2:2

Content type: Short Report

Published on: 7 January 2009
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

Authors: Mi-Youn Brusniak, Bernd Bodenmiller, David Campbell, Kelly Cooke, James Eddes, Andrew Garbutt, Hollis Lau, Simon Letarte, Lukas N Mueller, Vagisha Sharma, Olga Vitek, Ning Zhang, Ruedi Aebersold and Julian D Watts

Citation: BMC Bioinformatics 2008 9:542

Content type: Methodology article

Published on: 16 December 2008
Algorithm of OMA for large-scale orthology inference

Authors: Alexander CJ Roth, Gaston H Gonnet and Christophe Dessimoz

Citation: BMC Bioinformatics 2008 9:518

Content type: Methodology article

Published on: 4 December 2008
Proteomics studies confirm the presence of alternative protein isoforms on a large scale

Authors: Michael L Tress, Bernd Bodenmiller, Ruedi Aebersold and Alfonso Valencia

Citation: Genome Biology 2008 9:R162

Content type: Research

Published on: 18 November 2008
SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and ×86/SSE2

Authors: Adam Szalkowski, Christian Ledergerber, Philipp Krähenbühl and Christophe Dessimoz

Citation: BMC Research Notes 2008 1:107

Content type: Technical Note

Published on: 29 October 2008
1143 Compressed sensing cardiac perfusion imaging: feasibility and comparison to k-t BLAST

Authors: Viton Vitanis, Urs Gamper, Peter Boesiger and Sebastian Kozerke

Citation: Journal of Cardiovascular Magnetic Resonance 2008 10(Suppl 1):A268

Content type: Meeting abstract

Published on: 22 October 2008

This article is part of a Supplement: Volume 10 Supplement 1
Differential Plasma Glycoproteome of p19^ARF Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform

Authors: Simon Letarte, Mi-Youn Brusniak, David Campbell, James Eddes, Christopher J. Kemp, Hollis Lau, Lukas Mueller, Alexander Schmidt, Paul Shannon, Karen S. Kelly-Spratt, Olga Vitek, Hui Zhang, Ruedi Aebersold and Julian D. Watts

Citation: Clinical Proteomics 2008 4:9018

Content type: Article

Published on: 2 October 2008
Post-traumatic glenohumeral cartilage lesions: a systematic review

Authors: Heidi Ruckstuhl, Eling D de Bruin, Edgar Stussi and Benedicte Vanwanseele

Citation: BMC Musculoskeletal Disorders 2008 9:107

Content type: Research article

Published on: 23 July 2008
Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise

Authors: Christophe Dessimoz and Manuel Gil

Citation: BMC Evolutionary Biology 2008 8:179

Content type: Methodology article

Published on: 23 June 2008
An analytic and systematic framework for estimating metabolic flux ratios from ¹³C tracer experiments

Authors: Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo and Esko Ukkonen

Citation: BMC Bioinformatics 2008 9:266

Content type: Methodology article

Published on: 6 June 2008
Organization of the pronephric kidney revealed by large-scale gene expression mapping

Authors: Daniela Raciti, Luca Reggiani, Lars Geffers, Qiuhong Jiang, Francesca Bacchion, Astrid E Subrizi, Dave Clements, Christopher Tindal, Duncan R Davidson, Brigitte Kaissling and André W Brändli

Citation: Genome Biology 2008 9:R84

Content type: Research

Published on: 20 May 2008
Control of trichome branching by Chromatin Assembly Factor-1

Authors: Vivien Exner, Wilhelm Gruissem and Lars Hennig

Citation: BMC Plant Biology 2008 8:54

Content type: Research article

Published on: 13 May 2008
Mortality selection during the 2003 European heat wave in three-spined sticklebacks: effects of parasites and MHC genotype

Authors: K Mathias Wegner, Martin Kalbe, Manfred Milinski and Thorsten BH Reusch

Citation: BMC Evolutionary Biology 2008 8:124

Content type: Research article

Published on: 30 April 2008
Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance

Authors: Basil Honegger, Milos Galic, Katja Köhler, Franz Wittwer, Walter Brogiolo, Ernst Hafen and Hugo Stocker

Citation: Journal of Biology 2008 7:10

Content type: Research article

Published on: 15 April 2008
Evolutionary Pareto-optimization of stably folding peptides

Authors: Wolfram Gronwald, Tim Hohm and Daniel Hoffmann

Citation: BMC Bioinformatics 2008 9:109

Content type: Research article

Published on: 19 February 2008
Annotating novel genes by integrating synthetic lethals and genomic information

Authors: Daniel Schöner, Markus Kalisch, Christian Leisner, Lukas Meier, Marc Sohrmann, Mahamadou Faty, Yves Barral, Matthias Peter, Wilhelm Gruissem and Peter Bühlmann

Citation: BMC Systems Biology 2008 2:3

Content type: Research article

Published on: 14 January 2008
PlantDB – a versatile database for managing plant research

Authors: Vivien Exner, Matthias Hirsch-Hoffmann, Wilhelm Gruissem and Lars Hennig

Citation: Plant Methods 2008 4:1

Content type: Software

Published on: 8 January 2008
Time-series alignment by non-negative multiple generalized canonical correlation analysis

Authors: Bernd Fischer, Volker Roth and Joachim M Buhmann

Citation: BMC Bioinformatics 2007 8(Suppl 10):S4

Content type: Proceedings

Published on: 21 December 2007

This article is part of a Supplement: Volume 8 Supplement 10

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ETH Zurich

ETH Zurich's Articles

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae

The constancy of gene conservation across divergent bacterial orders

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics

Algorithm of OMA for large-scale orthology inference

Proteomics studies confirm the presence of alternative protein isoforms on a large scale

SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and ×86/SSE2

1143 Compressed sensing cardiac perfusion imaging: feasibility and comparison to k-t BLAST

Differential Plasma Glycoproteome of p19^ARF Skin Cancer Mouse Model Using the Corra Label-Free LC-MS Proteomics Platform

Post-traumatic glenohumeral cartilage lesions: a systematic review

Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise

An analytic and systematic framework for estimating metabolic flux ratios from ¹³C tracer experiments

Organization of the pronephric kidney revealed by large-scale gene expression mapping

Control of trichome branching by Chromatin Assembly Factor-1

Mortality selection during the 2003 European heat wave in three-spined sticklebacks: effects of parasites and MHC genotype

Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistance

Evolutionary Pareto-optimization of stably folding peptides

Annotating novel genes by integrating synthetic lethals and genomic information

PlantDB – a versatile database for managing plant research

Time-series alignment by non-negative multiple generalized canonical correlation analysis