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Lawrence Berkeley National Laboratory's Articles

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Page 35 of 39

Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis

Authors: Uffe Hellsten, Mustafa K Khokha, Timothy C Grammer, Richard M Harland, Paul Richardson and Daniel S Rokhsar

Citation: BMC Biology 2007 5:31

Content type: Research article

Published on: 25 July 2007
Molecular steps in sGC activation

Authors: Elizabeth M Boon, Stephen PL Cary, Shirley H Huang, Jonathan A Winger, Emily R Derbyshire, Mark S Price, William K Erbil and Michael A Marletta

Citation: BMC Pharmacology 2007 7(Suppl 1):S27

Content type: Oral presentation

Published on: 25 July 2007

This article is part of a Supplement: Volume 7 Supplement 1
Global analysis of patterns of gene expression during Drosophilaembryogenesis

Authors: Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker and Gerald M Rubin

Citation: Genome Biology 2007 8:R145

Content type: Research

Published on: 23 July 2007
Drosophila by the dozen

Authors: Susan E Celniker and Roger A Hoskins

Citation: Genome Biology 2007 8:309

Content type: Meeting report

Published on: 13 July 2007
Interactive processing and visualization of image data for biomedical and life science applications

Authors: Oliver G Staadt, Vijay Natarajan, Gunther H Weber, David F Wiley and Bernd Hamann

Citation: BMC Cell Biology 2007 8(Suppl 1):S10

Content type: Research

Published on: 10 July 2007

This article is part of a Supplement: Volume 8 Supplement 1
Automatic image analysis for gene expression patterns of fly embryos

Authors: Hanchuan Peng, Fuhui Long, Jie Zhou, Garmay Leung, Michael B Eisen and Eugene W Myers

Citation: BMC Cell Biology 2007 8(Suppl 1):S7

Content type: Research

Published on: 10 July 2007

This article is part of a Supplement: Volume 8 Supplement 1
Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Authors: Fuhui Long, Hanchuan Peng, Damir Sudar, Sophie A Lelièvre and David W Knowles

Citation: BMC Cell Biology 2007 8(Suppl 1):S3

Content type: Research

Published on: 10 July 2007

This article is part of a Supplement: Volume 8 Supplement 1
Development of Multiscale Biological Image Data Analysis: Review of 2006 International Workshop on Multiscale Biological Imaging, Data Mining and Informatics, Santa Barbara, USA (BII06)

Authors: Manfred Auer, Hanchuan Peng and Ambuj Singh

Citation: BMC Cell Biology 2007 8(Suppl 1):S1

Content type: Introduction

Published on: 10 July 2007

This article is part of a Supplement: Volume 8 Supplement 1
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

Authors: Charles Bland, Teresa L Ramsey, Fareedah Sabree, Micheal Lowe, Kyndall Brown, Nikos C Kyrpides and Philip Hugenholtz

Citation: BMC Bioinformatics 2007 8:209

Content type: Software

Published on: 18 June 2007
MPHASYS: a mouse phenotype analysis system

Authors: R Brent Calder, Rudolf B Beems, Harry van Steeg, I Saira Mian, Paul HM Lohman and Jan Vijg

Citation: BMC Bioinformatics 2007 8:183

Content type: Software

Published on: 6 June 2007
Evolutionary conservation of sequence and secondary structures in CRISPR repeats

Authors: Victor Kunin, Rotem Sorek and Philip Hugenholtz

Citation: Genome Biology 2007 8:R61

Content type: Research

Published on: 18 April 2007
Enhanced NFκB and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer

Authors: Yamei Zhou, Christina Yau, Joe W Gray, Karen Chew, Shanaz H Dairkee, Dan H Moore, Urs Eppenberger, Serenella Eppenberger-Castori and Christopher C Benz

Citation: BMC Cancer 2007 7:59

Content type: Research article

Published on: 3 April 2007
Reactome: a knowledge base of biologic pathways and processes

Authors: Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney and Lincoln Stein

Citation: Genome Biology 2007 8:R39

Content type: Software

Published on: 16 March 2007

The Erratum to this article has been published in Genome Biology 2009 10:402
RNA-editing-mediated exon evolution

Authors: Galit Lev-Maor, Rotem Sorek, Erez Y Levanon, Nurit Paz, Eli Eisenberg and Gil Ast

Citation: Genome Biology 2007 8:R29

Content type: Research

Published on: 27 February 2007
Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized

Authors: Yizheng Li, Jing Pan, Jian-Liang Li, Jee Hyung Lee, Chris Tunkey, Katie Saraf, James C Garbe, Maryann Z Whitley, Scott A Jelinsky, Martha R Stampfer and Steven A Haney

Citation: Molecular Cancer 2007 6:7

Content type: Research

Published on: 18 January 2007
Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons

Authors: Qian-fei Wang, Shyam Prabhakar, Sumita Chanan, Jan-Fang Cheng, Edward M Rubin and Dario Boffelli

Citation: Genome Biology 2007 8:R1

Content type: Research

Published on: 3 January 2007
Three-dimensional morphology and gene expression in the Drosophilablastoderm at cellular resolution II: dynamics

Authors: Soile VE Keränen, Charless C Fowlkes, Cris L Luengo Hendriks, Damir Sudar, David W Knowles, Jitendra Malik and Mark D Biggin

Citation: Genome Biology 2006 7:R124

Content type: Research

Published on: 21 December 2006
Three-dimensional morphology and gene expression in the Drosophilablastoderm at cellular resolution I: data acquisition pipeline

Authors: Cris L Luengo Hendriks, Soile VE Keränen, Charless C Fowlkes, Lisa Simirenko, Gunther H Weber, Angela H DePace, Clara Henriquez, David W Kaszuba, Bernd Hamann, Michael B Eisen, Jitendra Malik, Damir Sudar, Mark D Biggin and David W Knowles

Citation: Genome Biology 2006 7:R123

Content type: Research

Published on: 21 December 2006
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Authors: Tim F Rayner, Philippe Rocca-Serra, Paul T Spellman, Helen C Causton, Anna Farne, Ele Holloway, Rafael A Irizarry, Junmin Liu, Donald S Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J Stoeckert Jr, Joseph White, Patricia L Whetzel…

Citation: BMC Bioinformatics 2006 7:489

Content type: Commentary

Published on: 6 November 2006
Assessing the number of ancestral alternatively spliced exons in the human genome

Authors: Rotem Sorek, Gideon Dror and Ron Shamir

Citation: BMC Genomics 2006 7:273

Content type: Research article

Published on: 24 October 2006

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Lawrence Berkeley National Laboratory

Lawrence Berkeley National Laboratory's Articles

Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis

Molecular steps in sGC activation

Global analysis of patterns of gene expression during Drosophilaembryogenesis

Drosophila by the dozen

Interactive processing and visualization of image data for biomedical and life science applications

Automatic image analysis for gene expression patterns of fly embryos

Phenotype clustering of breast epithelial cells in confocal images based on nuclear protein distribution analysis

Development of Multiscale Biological Image Data Analysis: Review of 2006 International Workshop on Multiscale Biological Imaging, Data Mining and Informatics, Santa Barbara, USA (BII06)

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

MPHASYS: a mouse phenotype analysis system

Evolutionary conservation of sequence and secondary structures in CRISPR repeats

Enhanced NFκB and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer

Reactome: a knowledge base of biologic pathways and processes

RNA-editing-mediated exon evolution

Transcriptional changes associated with breast cancer occur as normal human mammary epithelial cells overcome senescence barriers and become immortalized

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons

Three-dimensional morphology and gene expression in the Drosophilablastoderm at cellular resolution II: dynamics

Three-dimensional morphology and gene expression in the Drosophilablastoderm at cellular resolution I: data acquisition pipeline

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Assessing the number of ancestral alternatively spliced exons in the human genome