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Lawrence Berkeley National Laboratory's Articles

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Page 37 of 39

Cell membrane array fabrication and assay technology

Authors: Victoria Yamazaki, Oksana Sirenko, Robert J Schafer, Luat Nguyen, Thomas Gutsmann, Lore Brade and Jay T Groves

Citation: BMC Biotechnology 2005 5:18

Content type: Methodology article

Published on: 16 June 2005
Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery

Authors: Leslie R Grate

Citation: BMC Bioinformatics 2005 6:97

Content type: Research article

Published on: 13 April 2005
Keystone symposium: The role of microenvironment in tumor induction and progression, Banff, Canada, 5–10 February 2005

Authors: Jamie L Bascom and Paraic A Kenny

Citation: Breast Cancer Research 2005 7:113

Content type: Meeting report

Published on: 6 April 2005
All motifs are NOT created equal: structural properties of transcription factor-DNA interactions and the inference of sequence specificity

Authors: Michael B Eisen

Citation: Genome Biology 2005 6:P7

Content type: Deposited research article

Published on: 31 March 2005
Comparative mapping of sequence-based and structure-based protein domains

Authors: Ya Zhang, John-Marc Chandonia, Chris Ding and Stephen R Holbrook

Citation: BMC Bioinformatics 2005 6:77

Content type: Research article

Published on: 25 March 2005
Serendipitous discovery of Wolbachia genomes in multiple Drosophilaspecies

Authors: Steven L Salzberg, Julie C Dunning Hotopp, Arthur L Delcher, Mihai Pop, Douglas R Smith, Michael B Eisen and William C Nelson

Citation: Genome Biology 2005 6:R23

Content type: Research

Published on: 22 February 2005

The Erratum to this article has been published in Genome Biology 2005 6:402
GATA: a graphic alignment tool for comparative sequence analysis

Authors: David A Nix and Michael B Eisen

Citation: BMC Bioinformatics 2005 6:9

Content type: Software

Published on: 17 January 2005
Receptor and secreted targets of Wnt-1/β-catenin signalling in mouse mammary epithelial cells

Authors: Paraic A Kenny, Tariq Enver and Alan Ashworth

Citation: BMC Cancer 2005 5:3

Content type: Research article

Published on: 10 January 2005
Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1 nuclease

Authors: Maho Niwa, Christopher K Patil, Joe DeRisi and Peter Walter

Citation: Genome Biology 2004 6:R3

Content type: Research

Published on: 22 December 2004
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

Authors: Alan M Moses, Derek Y Chiang, Daniel A Pollard, Venky N Iyer and Michael B Eisen

Citation: Genome Biology 2004 5:R98

Content type: Method

Published on: 30 November 2004
New highlights on stroma–epithelial interactions in breast cancer

Authors: Mary Helen Barcellos-Hoff and Daniel Medina

Citation: Breast Cancer Research 2004 7:33

Content type: Commentary

Published on: 25 November 2004
Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

Authors: Dmitry A Rodionov, Inna Dubchak, Adam Arkin, Eric Alm and Mikhail S Gelfand

Citation: Genome Biology 2004 5:R90

Content type: Research

Published on: 22 October 2004
The lords of the genomes

Authors: Mark Stapleton

Citation: Genome Biology 2004 5:349

Content type: Meeting report

Published on: 28 September 2004
Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura

Authors: Jeffrey L Boore

Citation: BMC Genomics 2004 5:67

Content type: Research article

Published on: 15 September 2004
Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillusspecies

Authors: Michael W Rey, Preethi Ramaiya, Beth A Nelson, Shari D Brody-Karpin, Elizabeth J Zaretsky, Maria Tang, Alfredo Lopez de Leon, Henry Xiang, Veronica Gusti, Ib Groth Clausen, Peter B Olsen, Michael D Rasmussen, Jens T Andersen, Per L Jørgensen, Thomas S Larsen, Alexei Sorokin…

Citation: Genome Biology 2004 5:r77

Content type: Research

Published on: 13 September 2004
Structural genomics and structural biology: compare and contrast

Authors: John-Marc Chandonia, Thomas N Earnest and Steven E Brenner

Citation: Genome Biology 2004 5:343

Content type: Meeting report

Published on: 25 August 2004
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

Authors: Benjamin P Berman, Barret D Pfeiffer, Todd R Laverty, Steven L Salzberg, Gerald M Rubin, Michael B Eisen and Susan E Celniker

Citation: Genome Biology 2004 5:R61

Content type: Research

Published on: 20 August 2004
A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

Authors: Yanjing Xiao, Austin L Hughes, Junko Ando, Yoichi Matsuda, Jan-Fang Cheng, Donald Skinner-Noble and Guolong Zhang

Citation: BMC Genomics 2004 5:56

Content type: Research article

Published on: 13 August 2004
Detecting DNA regulatory motifs by incorporating positional trends in information content

Authors: Katherina J Kechris, Erik van Zwet, Peter J Bickel and Michael B Eisen

Citation: Genome Biology 2004 5:R50

Content type: Method

Published on: 24 June 2004
Erratum to: Benchmarking tools for the alignment of functional noncoding DNA

Authors: DA Pollard, CM Bergman, J Stoye, SE Celniker and MB Eisen

Citation: BMC Bioinformatics 2004 5:73

Content type: Erratum

Published on: 8 June 2004

The original article was published in BMC Bioinformatics 2004 5:6

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Lawrence Berkeley National Laboratory

Lawrence Berkeley National Laboratory's Articles

Cell membrane array fabrication and assay technology

Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery

Keystone symposium: The role of microenvironment in tumor induction and progression, Banff, Canada, 5–10 February 2005

All motifs are NOT created equal: structural properties of transcription factor-DNA interactions and the inference of sequence specificity

Comparative mapping of sequence-based and structure-based protein domains

Serendipitous discovery of Wolbachia genomes in multiple Drosophilaspecies

GATA: a graphic alignment tool for comparative sequence analysis

Receptor and secreted targets of Wnt-1/β-catenin signalling in mouse mammary epithelial cells

Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1 nuclease

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

New highlights on stroma–epithelial interactions in breast cancer

Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

The lords of the genomes

Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura

Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillusspecies

Structural genomics and structural biology: compare and contrast

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins

Detecting DNA regulatory motifs by incorporating positional trends in information content

Erratum to: Benchmarking tools for the alignment of functional noncoding DNA