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Lawrence Berkeley National Laboratory's Articles

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Page 6 of 39

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

Authors: Shingo Miyauchi, Anaïs Rancon, Elodie Drula, Hayat Hage, Delphine Chaduli, Anne Favel, Sacha Grisel, Bernard Henrissat, Isabelle Herpoël-Gimbert, Francisco J. Ruiz-Dueñas, Didier Chevret, Matthieu Hainaut, Junyan Lin, Mei Wang, Jasmyn Pangilinan, Anna Lipzen…

Citation: Biotechnology for Biofuels 2018 11:201

Content type: Research

Published on: 23 July 2018
Increased drought tolerance in plants engineered for low lignin and low xylan content

Authors: Jingwei Yan, Aude Aznar, Camille Chalvin, Devon S. Birdseye, Edward E. K. Baidoo, Aymerick Eudes, Patrick M. Shih, Dominique Loqué, Aying Zhang and Henrik V. Scheller

Citation: Biotechnology for Biofuels 2018 11:195

Content type: Research

Published on: 18 July 2018
Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon

Authors: Evan P. Starr, Shengjing Shi, Steven J. Blazewicz, Alexander J. Probst, Donald J. Herman, Mary K. Firestone and Jillian F. Banfield

Citation: Microbiome 2018 6:122

Content type: Research

Published on: 3 July 2018
Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

Authors: Chunman Zuo, Matthew Blow, Avinash Sreedasyam, Rita C. Kuo, Govindarajan Kunde Ramamoorthy, Ivone Torres-Jerez, Guifen Li, Mei Wang, David Dilworth, Kerrie Barry, Michael Udvardi, Jeremy Schmutz, Yuhong Tang and Ying Xu

Citation: Biotechnology for Biofuels 2018 11:170

Content type: Research

Published on: 20 June 2018
Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts

Authors: Xinyan Wu, Muhammad Saddiq Zahari, Santosh Renuse, Nandini A. Sahasrabuddhe, Raghothama Chaerkady, Min-Sik Kim, Mary Jo Fackler, Martha Stampfer, Edward Gabrielson, Saraswati Sukumar and Akhilesh Pandey

Citation: Clinical Proteomics 2018 15:21

Content type: Research

Published on: 15 June 2018

The Correction to this article has been published in Clinical Proteomics 2018 15:37
Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

Authors: Bochra A. Bahri, Guillaume Daverdin, Xiangyang Xu, Jan-Fang Cheng, Kerrie W. Barry, E. Charles Brummer and Katrien M. Devos

Citation: BMC Evolutionary Biology 2018 18:91

Content type: Research article

Published on: 14 June 2018
A Pseudomonas putida efflux pump acts on short-chain alcohols

Authors: Georg Basler, Mitchell Thompson, Danielle Tullman-Ercek and Jay Keasling

Citation: Biotechnology for Biofuels 2018 11:136

Content type: Research

Published on: 11 May 2018
A comparison of methods used to unveil the genetic and metabolic pool in the built environment

Authors: Cinta Gomez-Silvan, Marcus H. Y. Leung, Katherine A. Grue, Randeep Kaur, Xinzhao Tong, Patrick K. H. Lee and Gary L. Andersen

Citation: Microbiome 2018 6:71

Content type: Research

Published on: 16 April 2018
Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae

Authors: Stephanie A. Davis López, Douglas Andrew Griffith, Brian Choi, Jamie H. D. Cate and Danielle Tullman-Ercek

Citation: Biotechnology for Biofuels 2018 11:90

Content type: Research

Published on: 2 April 2018
A transgene design for enhancing oil content in Arabidopsis and Camelina seeds

Authors: Yerong Zhu, Linan Xie, Grace Q. Chen, Mi Yeon Lee, Dominique Loque and Henrik Vibe Scheller

Citation: Biotechnology for Biofuels 2018 11:46

Content type: Research

Published on: 21 February 2018
Engineering E. coli for simultaneous glucose–xylose utilization during methyl ketone production

Authors: Xi Wang, Ee-Been Goh and Harry R. Beller

Citation: Microbial Cell Factories 2018 17:12

Content type: Research

Published on: 27 January 2018
MIRO: guidelines for minimum information for the reporting of an ontology

Authors: Nicolas Matentzoglu, James Malone, Chris Mungall and Robert Stevens

Citation: Journal of Biomedical Semantics 2018 9:6

Content type: Review

Published on: 18 January 2018
Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass

Authors: Aude Aznar, Camille Chalvin, Patrick M. Shih, Michael Maimann, Berit Ebert, Devon S. Birdseye, Dominique Loqué and Henrik V. Scheller

Citation: Biotechnology for Biofuels 2018 11:2

Content type: Research

Published on: 9 January 2018
Report from the 2016 CrossConnects workshop: improving data mobility & management for bioinformatics

Authors: Kathryn Petersen Mace, Daniel Jacobson, Brooklin Gore, Lauren Rotman, Jennifer Schopf, Mary Hester, Predrag Radulovic and William Barnett

Citation: Standards in Genomic Sciences 2017 12:83

Content type: Meeting report

Published on: 19 December 2017
A multivariate analysis of CalEnviroScreen: comparing environmental and socioeconomic stressors versus chronic disease

Authors: Ben K. Greenfield, Jayant Rajan and Thomas E. McKone

Citation: Environmental Health 2017 16:131

Content type: Research

Published on: 13 December 2017
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales

Authors: Raúl Castanera, Gúmer Pérez, Leticia López-Varas, Joëlle Amselem, Kurt LaButti, Vasanth Singan, Anna Lipzen, Sajeet Haridas, Kerrie Barry, Igor V. Grigoriev, Antonio G. Pisabarro and Lucía Ramírez

Citation: BMC Genomics 2017 18:883

Content type: Research article

Published on: 16 November 2017
Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

Authors: Elsayed T. Mohamed, Shizeng Wang, Rebecca M. Lennen, Markus J. Herrgård, Blake A. Simmons, Steven W. Singer and Adam M. Feist

Citation: Microbial Cell Factories 2017 16:204

Content type: Research

Published on: 16 November 2017
Xylose induces cellulase production in Thermoascus aurantiacus

Authors: Timo Schuerg, Jan-Philip Prahl, Raphael Gabriel, Simon Harth, Firehiwot Tachea, Chyi-Shin Chen, Matthew Miller, Fabrice Masson, Qian He, Sarah Brown, Mona Mirshiaghi, Ling Liang, Lauren M. Tom, Deepti Tanjore, Ning Sun, Todd R. Pray…

Citation: Biotechnology for Biofuels 2017 10:271

Content type: Research

Published on: 15 November 2017
Correction to: Towards a balanced view of the bacterial tree of life

Authors: Frederik Schulz, Emiley A. Eloe-Fadrosh, Robert M. Bowers, Jessica Jarett, Torben Nielsen, Natalia N. Ivanova, Nikos C. Kyrpides and Tanja Woyke

Citation: Microbiome 2017 5:149

Content type: Correction

Published on: 15 November 2017

The original article was published in Microbiome 2017 5:140
Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate

Authors: Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C. Burow, Angela M. Detweiler, Peter K. Weber, Ulas Karaoz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout and Jennifer Pett-Ridge

Citation: Standards in Genomic Sciences 2017 12:67

Content type: Metagenome report

Published on: 15 November 2017

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Lawrence Berkeley National Laboratory

Lawrence Berkeley National Laboratory's Articles

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

Increased drought tolerance in plants engineered for low lignin and low xylan content

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.)

A Pseudomonas putida efflux pump acts on short-chain alcohols

A comparison of methods used to unveil the genetic and metabolic pool in the built environment

Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae

A transgene design for enhancing oil content in Arabidopsis and Camelina seeds

Engineering E. coli for simultaneous glucose–xylose utilization during methyl ketone production

MIRO: guidelines for minimum information for the reporting of an ontology

Gene stacking of multiple traits for high yield of fermentable sugars in plant biomass

Report from the 2016 CrossConnects workshop: improving data mobility & management for bioinformatics

A multivariate analysis of CalEnviroScreen: comparing environmental and socioeconomic stressors versus chronic disease

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales

Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

Xylose induces cellulase production in Thermoascus aurantiacus

Correction to: Towards a balanced view of the bacterial tree of life

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate