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  1. Wucai (Brassica campestris L. ssp. chinensis var. rosularis Tsen) is a variant of nonheading Chinese cabbage (Brassica campestris L.), which is one of the major vegetables in China. Cytoplasmic male sterility (CM...

    Authors: Guohu Chen, Xinyu Ye, Shengyun Zhang, Shidong Zhu, Lingyun Yuan, Jinfeng Hou and Chenggang Wang

    Citation: BMC Genomics 2018 19:908

    Content type: Research article

    Published on:

  2. Chromatin-immunoprecipitation followed by sequencing (ChIP-seq) is the method of choice for mapping genome-wide binding of chromatin-associated factors. However, broadly applicable methods for between-sample c...

    Authors: Luis A. Vale-Silva, Tovah E. Markowitz and Andreas Hochwagen

    Citation: BMC Genomics 2019 20:54

    Content type: Methodology article

    Published on:

  3. Aging is associated with functional decline of neurons and increased incidence of both neurodegenerative and ocular disease. Photoreceptor neurons in Drosophila melanogaster provide a powerful model for studying ...

    Authors: Hana Hall, Patrick Medina, Daphne A. Cooper, Spencer E. Escobedo, Jeremiah Rounds, Kaelan J. Brennan, Christopher Vincent, Pedro Miura, Rebecca Doerge and Vikki M. Weake

    Citation: BMC Genomics 2017 18:894

    Content type: Research article

    Published on:

  4. Species tree estimation is frequently based on phylogenomic approaches that use multiple genes from throughout the genome. However, estimating a species tree from a collection of gene trees can be complicated ...

    Authors: Mazharul Islam, Kowshika Sarker, Trisha Das, Rezwana Reaz and Md. Shamsuzzoha Bayzid

    Citation: BMC Genomics 2020 21:136

    Content type: Software

    Published on:

  5. Monogenean flatworms are the main fish ectoparasites inflicting serious economic losses in aquaculture. The polyopisthocotylean Sparicotyle chrysophrii parasitizes the gills of gilthead sea bream (GSB, Sparus aur...

    Authors: M. Carla Piazzon, Ivona Mladineo, Fernando Naya-Català, Ron P. Dirks, Susanne Jong-Raadsen, Anamarija Vrbatović, Jerko Hrabar, Jaume Pérez-Sánchez and Ariadna Sitjà-Bobadilla

    Citation: BMC Genomics 2019 20:200

    Content type: Research article

    Published on:

  6. Transposables elements (TEs) contribute to both structural and functional dynamics of most eukaryotic genomes. Because of their propensity to densely populate plant and animal genomes, the precise estimation o...

    Authors: Emilie Debladis, Christel Llauro, Marie-Christine Carpentier, Marie Mirouze and Olivier Panaud

    Citation: BMC Genomics 2017 18:537

    Content type: Methodology article

    Published on:

  7. Members of the MtN3/saliva/SWEET gene family are present in various organisms and are highly conserved. Their precise biochemical functions remain unclear, especially in Chinese cabbage. Based on the whole gen...

    Authors: Liming Miao, Yanxia Lv, Lijun Kong, Qizhen Chen, Chaoquan Chen, Jia Li, Fanhuan Zeng, Shenyun Wang, Jianbin Li, Li Huang, Jiashu Cao and Xiaolin Yu

    Citation: BMC Genomics 2018 19:174

    Content type: Research article

    Published on:

  8. Copy number variations (CNVs) are structural variants consisting of large-scale insertions and deletions of genomic fragments. Exploring CNVs and estimating their effects on phenotypes are useful for genome se...

    Authors: Mei Liu, Lingzhao Fang, Shuli Liu, Michael G. Pan, Eyal Seroussi, John B. Cole, Li Ma, Hong Chen and George E. Liu

    Citation: BMC Genomics 2019 20:181

    Content type: Research article

    Published on:

  9. The SnRK2s (Plant specific protein kinase) are involved in various biological processes, such as plant defense and environmental challenges. In Arabidopsis, AtSnRK2s regulate the expression of some metal transpor...

    Authors: Ruijiao Wang, Chao Wang, Qin Yao, Xue Xiao, Xing Fan, Lina Sha, Jian Zeng, Houyang Kang, Haiqin Zhang, Yonghong Zhou and Yi Wang

    Citation: BMC Genomics 2019 20:210

    Content type: Research article

    Published on:

  11. The white rot fungus Phlebia radiata, a type species of the genus Phlebia, is an efficient decomposer of plant cell wall polysaccharides, modifier of softwood and hardwood lignin, and is able to produce ethanol f...

    Authors: Mari Mäkinen, Jaana Kuuskeri, Pia Laine, Olli-Pekka Smolander, Andriy Kovalchuk, Zhen Zeng, Fred O. Asiegbu, Lars Paulin, Petri Auvinen and Taina Lundell

    Citation: BMC Genomics 2019 20:430

    Content type: Research article

    Published on:

  13. Human population history in the Holocene was profoundly impacted by changes in lifestyle following the invention and adoption of food-production practices. These changes triggered significant increases in popu...

    Authors: Mário Vicente, Edita Priehodová, Issa Diallo, Eliška Podgorná, Estella S. Poloni, Viktor Černý and Carina M. Schlebusch

    Citation: BMC Genomics 2019 20:915

    Content type: Research article

    Published on:

  14. Despite its relevance, almost no studies account for the genetic control in the early stages of tree development, i.e. from germination on. This study seeks to make a quite complete transcriptome for olive dev...

    Authors: Jaime Jiménez-Ruiz, María de la O Leyva-Pérez, Isabel Vidoy-Mercado, Araceli Barceló and Francisco Luque

    Citation: BMC Genomics 2018 19:824

    Content type: Research article

    Published on:

  15. Hypothyroidism is a common complex endocrinopathy that typically has an autoimmune etiology, and it affects both humans and dogs. Genetic and environmental factors are both known to play important roles in the...

    Authors: Matteo Bianchi, Nima Rafati, Åsa Karlsson, Eva Murén, Carl-Johan Rubin, Katarina Sundberg, Göran Andersson, Olle Kämpe, Åke Hedhammar, Kerstin Lindblad-Toh and Gerli Rosengren Pielberg

    Citation: BMC Genomics 2020 21:307

    Content type: Research article

    Published on:

  16. Pectobacterium spp. are necrotrophic bacterial plant pathogens of the family Pectobacteriaceae, responsible for a wide spectrum of diseases of important crops and ornamental plants including soft rot, blackleg, a...

    Authors: Xiaoying Li, Yali Ma, Shuqing Liang, Yu Tian, Sanjun Yin, Sisi Xie and Hua Xie

    Citation: BMC Genomics 2018 19:889

    Content type: Research article

    Published on:

  17. Our understanding of the molecular mechanisms implementing pubertal maturation of the testis in vertebrates is incomplete. This topic is relevant in Atlantic salmon aquaculture, since precocious male puberty n...

    Authors: K. O. Skaftnesmo, R. B. Edvardsen, T. Furmanek, D. Crespo, E. Andersson, L. Kleppe, G. L. Taranger, J. Bogerd, R. W. Schulz and A. Wargelius

    Citation: BMC Genomics 2017 18:801

    Content type: Research article

    Published on:

  18. Genomic selection (GS) or genomic prediction is considered as a promising approach to accelerate tree breeding and increase genetic gain by shortening breeding cycle, but the efforts to develop routines for op...

    Authors: Linghua Zhou, Zhiqiang Chen, Lars Olsson, Thomas Grahn, Bo Karlsson, Harry X. Wu, Sven-Olof Lundqvist and María Rosario García-Gil

    Citation: BMC Genomics 2020 21:323

    Content type: Research article

    Published on:

  19. Third generation sequencing technologies, with sequencing reads in the tens- of kilo-bases, facilitate genome assembly by spanning ambiguous regions and improving continuity. This has been critical for plant g...

    Authors: Karen M. Moll, Peng Zhou, Thiruvarangan Ramaraj, Diego Fajardo, Nicholas P. Devitt, Michael J. Sadowsky, Robert M. Stupar, Peter Tiffin, Jason R. Miller, Nevin D. Young, Kevin A. T. Silverstein and Joann Mudge

    Citation: BMC Genomics 2017 18:578

    Content type: Research article

    Published on:

  20. Cubozoans (box jellyfish) are cnidarians that have evolved a number of distinguishing features. Many cubozoans have a particularly potent sting, effected by stinging structures called nematocysts; cubozoans ha...

    Authors: Cheryl Lewis Ames, Joseph F. Ryan, Alexandra E. Bely, Paulyn Cartwright and Allen G. Collins

    Citation: BMC Genomics 2016 17:650

    Content type: Research article

    Published on:

    The Erratum to this article has been published in BMC Genomics 2016 17:980

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